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metacore software  (GeneGo Inc)

 
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    GeneGo Inc metacore software
    Proteomics analysis of BMM. (A) Rank plot displaying protein expression differences between DMD and control mice. Black dots represent significantly expressed proteins, while grey dots represent not-significantly expressed proteins. (B) Volcano plot depicting MS results, with proteins coloured in red having a Log2 DMD/Control ratio of > 1.5 and -log10(P) of >10, and proteins coloured in blue having a Log2 DMD/Control ratio of < −1.5 and -log10(P) of >10. (C) Principal component analysis using the reporter ion log 2 ratios of all analysed proteins showing mdx βgeo BMM having a distinct proteomic profile and higher heterogeneity compared to C57BL/6 BMMs. (D) <t>MetaCore</t> process network analysis showing that process networks related to cell adhesion, phagocytosis, cell cycle and cytoskeleton were over-represented in mdx βgeo BMM.
    Metacore Software, supplied by GeneGo Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/metacore software/product/GeneGo Inc
    Average 90 stars, based on 1 article reviews
    metacore software - by Bioz Stars, 2026-05
    90/100 stars

    Images

    1) Product Images from "Dystrophin Dp71 is essential for the development and function of macrophages"

    Article Title: Dystrophin Dp71 is essential for the development and function of macrophages

    Journal: bioRxiv

    doi: 10.1101/2025.04.24.650386

    Proteomics analysis of BMM. (A) Rank plot displaying protein expression differences between DMD and control mice. Black dots represent significantly expressed proteins, while grey dots represent not-significantly expressed proteins. (B) Volcano plot depicting MS results, with proteins coloured in red having a Log2 DMD/Control ratio of > 1.5 and -log10(P) of >10, and proteins coloured in blue having a Log2 DMD/Control ratio of < −1.5 and -log10(P) of >10. (C) Principal component analysis using the reporter ion log 2 ratios of all analysed proteins showing mdx βgeo BMM having a distinct proteomic profile and higher heterogeneity compared to C57BL/6 BMMs. (D) MetaCore process network analysis showing that process networks related to cell adhesion, phagocytosis, cell cycle and cytoskeleton were over-represented in mdx βgeo BMM.
    Figure Legend Snippet: Proteomics analysis of BMM. (A) Rank plot displaying protein expression differences between DMD and control mice. Black dots represent significantly expressed proteins, while grey dots represent not-significantly expressed proteins. (B) Volcano plot depicting MS results, with proteins coloured in red having a Log2 DMD/Control ratio of > 1.5 and -log10(P) of >10, and proteins coloured in blue having a Log2 DMD/Control ratio of < −1.5 and -log10(P) of >10. (C) Principal component analysis using the reporter ion log 2 ratios of all analysed proteins showing mdx βgeo BMM having a distinct proteomic profile and higher heterogeneity compared to C57BL/6 BMMs. (D) MetaCore process network analysis showing that process networks related to cell adhesion, phagocytosis, cell cycle and cytoskeleton were over-represented in mdx βgeo BMM.

    Techniques Used: Expressing, Control



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    Image Search Results


    Proteomics analysis of BMM. (A) Rank plot displaying protein expression differences between DMD and control mice. Black dots represent significantly expressed proteins, while grey dots represent not-significantly expressed proteins. (B) Volcano plot depicting MS results, with proteins coloured in red having a Log2 DMD/Control ratio of > 1.5 and -log10(P) of >10, and proteins coloured in blue having a Log2 DMD/Control ratio of < −1.5 and -log10(P) of >10. (C) Principal component analysis using the reporter ion log 2 ratios of all analysed proteins showing mdx βgeo BMM having a distinct proteomic profile and higher heterogeneity compared to C57BL/6 BMMs. (D) MetaCore process network analysis showing that process networks related to cell adhesion, phagocytosis, cell cycle and cytoskeleton were over-represented in mdx βgeo BMM.

    Journal: bioRxiv

    Article Title: Dystrophin Dp71 is essential for the development and function of macrophages

    doi: 10.1101/2025.04.24.650386

    Figure Lengend Snippet: Proteomics analysis of BMM. (A) Rank plot displaying protein expression differences between DMD and control mice. Black dots represent significantly expressed proteins, while grey dots represent not-significantly expressed proteins. (B) Volcano plot depicting MS results, with proteins coloured in red having a Log2 DMD/Control ratio of > 1.5 and -log10(P) of >10, and proteins coloured in blue having a Log2 DMD/Control ratio of < −1.5 and -log10(P) of >10. (C) Principal component analysis using the reporter ion log 2 ratios of all analysed proteins showing mdx βgeo BMM having a distinct proteomic profile and higher heterogeneity compared to C57BL/6 BMMs. (D) MetaCore process network analysis showing that process networks related to cell adhesion, phagocytosis, cell cycle and cytoskeleton were over-represented in mdx βgeo BMM.

    Article Snippet: Protein ratios were transformed to log 2 -ratios and significant changes were determined by the permutation test followed by LIMMA for bioinformatics analysis with MetaCore software (GeneGo).

    Techniques: Expressing, Control

    MetaCore TM analysis of protein interactions. Protein–protein interaction network for DEPs in TR MCF-7 cells obtained from adiponectin-treated secondary-generation mammospheres compared to untreated cells (control, C). ( A ) MetaCore TM analysis of the network showing the Adiponectin Receptor 1 (AdipoR1)-Notch-Cyclin D1 ( p -value > 1.733 × 10 −8 ) interaction. Blue circles indicate downregulated proteins, while red circles mark upregulated proteins. ( B ) Enrichment analysis using the most significant GO annotations according to biological processes. The bar graph displays the significant biological processes of the hub proteins present in the network.

    Journal: Cells

    Article Title: Adiponectin Influences the Behavior of Stem Cells in Hormone-Resistant Breast Cancer

    doi: 10.3390/cells14040286

    Figure Lengend Snippet: MetaCore TM analysis of protein interactions. Protein–protein interaction network for DEPs in TR MCF-7 cells obtained from adiponectin-treated secondary-generation mammospheres compared to untreated cells (control, C). ( A ) MetaCore TM analysis of the network showing the Adiponectin Receptor 1 (AdipoR1)-Notch-Cyclin D1 ( p -value > 1.733 × 10 −8 ) interaction. Blue circles indicate downregulated proteins, while red circles mark upregulated proteins. ( B ) Enrichment analysis using the most significant GO annotations according to biological processes. The bar graph displays the significant biological processes of the hub proteins present in the network.

    Article Snippet: For network and enrichment analysis, we used MetaCore TM (GeneGo, Clarivate Analytics, London, UK) software, a knowledge database suitable for pathway analysis of experimental data and gene lists.

    Techniques: Control

    MetaCore TM interaction network analysis. Protein–protein interaction network for DEPs in TR MCF-7 cells obtained from adiponectin-treated secondary-generation mammospheres compared to untreated cells (control, C). ( A ) MetaCore TM analysis of the network evidencing the BID-Notch-AdipoR1 interaction ( p -value > 1.80 × 10 −8 ). Blue circles indicate downregulated proteins, while red circles mark upregulated proteins. ( B ) Enrichment analysis using the most significant GO annotations according to biological processes. The bar graph shows the significant biological processes of the hub proteins present in the network.

    Journal: Cells

    Article Title: Adiponectin Influences the Behavior of Stem Cells in Hormone-Resistant Breast Cancer

    doi: 10.3390/cells14040286

    Figure Lengend Snippet: MetaCore TM interaction network analysis. Protein–protein interaction network for DEPs in TR MCF-7 cells obtained from adiponectin-treated secondary-generation mammospheres compared to untreated cells (control, C). ( A ) MetaCore TM analysis of the network evidencing the BID-Notch-AdipoR1 interaction ( p -value > 1.80 × 10 −8 ). Blue circles indicate downregulated proteins, while red circles mark upregulated proteins. ( B ) Enrichment analysis using the most significant GO annotations according to biological processes. The bar graph shows the significant biological processes of the hub proteins present in the network.

    Article Snippet: For network and enrichment analysis, we used MetaCore TM (GeneGo, Clarivate Analytics, London, UK) software, a knowledge database suitable for pathway analysis of experimental data and gene lists.

    Techniques: Control